Stars
The goal of CSCpromoters is to extract, export and plot sequences of promoter regions from the genome fasta files.
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)
Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements.
Efficient phylogenetic tree inference for massive taxonomic datasets
A pipeline for bioinformatics analysis of bacterial genomes
Aligns short reads using dynamic seed size with strobemers
AlphaFold 3 inference pipeline.
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Algorithms for Routing and Solving the Traffic Assignment Problem
R package for distilling functional annotations of bacterial genomes and metagenomes
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public datab…
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
An updated pipeline for pangenome investigation
Access a database of word frequencies, in various natural languages.