Stars
openpilot is an operating system for robotics. Currently, it upgrades the driver assistance system on 300+ supported cars.
You like pytorch? You like micrograd? You love tinygrad! ❤️
Open source code for AlphaFold 2.
AlphaFold 3 inference pipeline.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Low bandwidth DoS tool. Slowloris rewrite in Python.
This is the development home of the workflow management system Snakemake. For general information, see
Nice-looking lightweight console ASCII line charts ╭┈╯ for NodeJS, browsers and terminal, no dependencies
Access a database of word frequencies, in various natural languages.
Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and methods for curve fitting.
Scripts to download genomes from the NCBI FTP servers
Fast genome-wide functional annotation through orthology assignment
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
COBRApy is a package for constraint-based modeling of metabolic networks.
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
A PyTorch Basecaller for Oxford Nanopore Reads
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
An updated pipeline for pangenome investigation
A tool for generating consensus long-read assemblies for bacterial genomes
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Variational autoencoder for metagenomic binning
Build a partitioned pangenome graph from microbial genomes
customizable pipeline to identify viral sequences from (meta)genomic data
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data