OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to be searched

AI-powered dialogue generation for Animal Crossing villagers using LLMs

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

A python library and command-line client for file storage on OSF

Overview of our data for microbial genomic benchmarking

Bayesian Inferential Regression for Differential Microbiome Analysis

Implementation of Krona to QIIME2

vsearch plugin for QIIME 2

Snakemake workflow to call germline variant

Consistency pipeline for hierarchies of orthologous groups (OGs) based on subsampling and tree reconciliation

Wraps swarm to perform pooled dereplication

A visualiser for Blaseball teams over time as a Sankey plot, using Python, the Plotly library and the SIBR Datablase

Amplicon processing protocols

⚙️ 🍄 QIIME 2 TEF1 classifiers for the FUSARIUM-ID database

Pacifica notification service to catch internal state of data and notify on that state

demultiplex into groups (subsets) rather than individual sample files, by barcode

Python CLI Uploader for Pacifica