Boolean Network Modeling

Cell cycle classifier for scRNA-seq data.

SYstems Genetic Network AnaLysis (SYGNAL) pipeline

Python module for the easy handling and analysis of DNase-seq data

A database containing the predictions for the Cancer miRNA-Regulatory Network.

A JavaScript visualization library for HTML and SVG.

Graph theory (network) library for visualisation and analysis

Python port of cMonkey, a machine-learning based method for clustering

cMonkey integrated biclustering algorithm

Stand alone version of miRvestigator HMM that takes as input a FASTA stlyed PSSM file.

oPOSSUM Version 3

An interface to get the latest KEGG data and compare it to sets of genes for over-representation.

cMonkey integrated biclustering algorithm

cMonkey integrated biclustering algorithm - official

A web server version of the miRvestigator framework.

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Code to access cMonkey RData objects and provide the data in a Python friendly manner.

Extracts sequence for promoter and 3' UTR regions. Eventually will be developed to extract all potential cis-regulatory regions.

Identify miRNA that binds to a PSSM motif from 3' UTR.

Official git repository for Biopython (originally converted from CVS)