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Long read based human genomic structural variation detection with cuteSV
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing
Techniques and numbers for estimating system's performance from first-principles
An online portal for exploring tandem repeats (TRs) genome-wide.
Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes
Cargo subcommand to build multiple versions of the same binary, each with a different CPU features set, merged into a single portable optimized binary
SIMD-accelerated radix sort for primitive types in pure Rust
Adapter for writing Martian stages in Rust
Fast on-disk representations for temporary biological data. Don't put it in the minus-80—just put it on dry ice!
Trinity RNA-Seq de novo transcriptome assembly
asl / BandageNG
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Download FASTQ files from SRA or ENA repositories.
MIPDB: A High-Quality Keypoint Annotation Dataset and Benchmark for Maize in Complex Field Scenes
LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads
A zlib implementation in rust available as a C dynamic library and as a rust crate
Ultra-fast preprocessing and quality control for long-read sequencing data
A modern static site generator by the Material for MkDocs team
coredumpy saves your crash site for post-mortem debugging
python module to plot beautiful and highly customizable genome browser tracks
Blazing fast parallel caching for Rust. Serializes complex data to a chunked file format to get CPU maximum power on data loads, but as a simple binary loader.
Variational autoencoder for metagenomic binning
A genetic algorithm implementation for Rust
Work in progress stack based language for my YouTube C course