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tsvkit Public
A command–line toolkit for fast manipulation, querying, and reporting on TSV data
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cami Public
A command–line toolkit for fast filtering, querying on CAMI taxonomy profiling file
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CAMISIM Public
Forked from CAMI-challenge/CAMISIMCAMISIM: Simulating metagenomes and microbial communities
Python Apache License 2.0 UpdatedNov 5, 2025 -
Metax Public
A Coverage-Informed Probabilistic Framework for Accurate Cross-Domain Taxon Profiling
1 UpdatedSep 20, 2025 -
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nf-core_training Public
Training material for nf-core workflows in metagenomics
UpdatedJan 31, 2024 -
dawnmy.github.io Public
Thoughts wander sometimes stay here
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedNov 21, 2023 -
nf-training Public
Forked from ggrimes/nf-trainingTraining material for https://carpentries-incubator.github.io/workflows-nextflow/
Nextflow UpdatedJul 31, 2023 -
codon Public
Forked from exaloop/codonA high-performance, zero-overhead, extensible Python compiler using LLVM
C++ Other UpdatedDec 9, 2022 -
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metat Public
The pipeline for metatranscriptomics analysis
Python Apache License 2.0 UpdatedApr 26, 2022 -
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kmcp Public
Forked from shenwei356/kmcpAccurate Metagenomic Profiling && Fast large-scale Sequence/Genome Searching
Go MIT License UpdatedJan 28, 2022 -
one-python-craftsman Public
Forked from piglei/one-python-craftsman来自一位 Pythonista 的编程经验分享，内容涵盖编码技巧、最佳实践与思维模式等方面。
Apache License 2.0 UpdatedDec 5, 2021 -
RiboDetector_trainer Public
rRNA sequences detection with bi-directional LSTM
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MobilityIndexRetriever Public
Retrieve the intercity, intracity mibility data
Python GNU General Public License v3.0 UpdatedMar 28, 2020 -
VirusBroadcast Public
Forked from KikiLetGo/VirusBroadcastA java virus broadcast simulation
Java UpdatedFeb 3, 2020 -
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HAPPY Public
Hi-C data Analysis and Processing PIpeline
Python Apache License 2.0 UpdatedJul 23, 2019 -
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Docker-motus Public
The Dockerfile to build Docker image for mOTUs
Shell Apache License 2.0 UpdatedJul 19, 2019 -
csvtk Public
Forked from shenwei356/csvtkAnother cross-platform, efficient and practical CSV/TSV toolkit
Go MIT License UpdatedJul 14, 2019 -
nanopolish Public
Forked from jts/nanopolishSignal-level algorithms for MinION data
C++ MIT License UpdatedJul 4, 2019 -
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aha Public archive
Reusable code snippets for Bioinf
CSS GNU General Public License v3.0 UpdatedOct 30, 2017 -
optBox Public
Tool box for parameter optimization
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multicorecsv Public
Forked from shenwei356/multicorecsvA multicore csv reader library in Go
Go MIT License UpdatedMar 10, 2017
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