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perturbseq-pipeline Public
Forked from weili-lab/perturbseq-pipelineA light-weight, reproducible Perturb-seq pipeline for preprocessing, QC, and perturbation analysis. Developed by Wei Li lab.
Python UpdatedOct 10, 2026 -
pertTF Public
Transformer model with single-cell perturbation predictions
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mageck2-doc Public
Documentations for mageck2
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mageck2 Public
A next generation of CRISPR screening analysis tool
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mageck2-demo Public
Runnable example datasets and workflows for mageck2 (CRISPR screen analysis)
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awesome-CRISPR Public
List of software/websites/databases/other stuff for genome engineering
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GB_code Public
Forked from Qingqing2020/GB_codecode for paper: An integrated multi-omics and network analysis of neutrophil differentiation from initial- to late-stage
Jupyter Notebook MIT License UpdatedDec 8, 2025 -
GEARS Public
Forked from snap-stanford/GEARSGEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
Python MIT License UpdatedMar 21, 2025 -
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PS Public
Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights in single-cell perturbation datasets.
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Lab_2020 Public
Forked from stat115/Lab_2020Repository for all labs for STAT115 for 2020
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SKYtree Public
Source codes for building glioma evolutionary trees from SKY data
R BSD 3-Clause "New" or "Revised" License UpdatedJun 9, 2020 -
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awesome-single-cell Public
Forked from seandavi/awesome-single-cellList of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
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mageck Public
Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)
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RNASeqReadSimulator Public
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
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