Implementation of Alphafold 3 from Google Deepmind in Pytorch

Open source implementation of AlphaFold3

Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold

Method to read diffuse scattering images and decompose them

Demo to replicate results from submitted article on combining phenix with spades for improved structure refinement

Repo containing demo to recreate Ion Sampling and designs discussed in 2023 Rosetta SPaDES submission

List of papers about Proteins Design using Deep Learning

TMol

protein docking using a density-based descriptor for atoms charge and dynamics

Generative Adversarial Transformers

a toolbox for the manipulation, modelling and analysis of molecular structures

A Julia package for data clustering

Riemannian Adaptive Optimization Methods with pytorch optim