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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

Popular repositories Loading

  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 132 54

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 98 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 61 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 48 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 44 14

  6. GenomeVIP GenomeVIP Public

    PHP 20 5

Repositories

Showing 10 of 141 repositories
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 19 AGPL-3.0 9 0 0 Updated Oct 9, 2025
  • SRescue Public

    Pipeline for SR-LR integration

    ding-lab/SRescue’s past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 8, 2025
  • rcwrapper Public

    calculate vaf for variants based on bam

    ding-lab/rcwrapper’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 8, 2025
  • ding-lab-spatial Public

    misc. spatial analyses for the Ding lab.

    ding-lab/ding-lab-spatial’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 30, 2025
  • FSAudit Public

    Filesystem audit visualization

    ding-lab/FSAudit’s past year of commit activity
    Shell 1 0 0 0 Updated Sep 29, 2025
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC’s past year of commit activity
    Shell 2 0 0 0 Updated Sep 16, 2025
  • GDC.case.discover Public

    Obtain submitted reads and clinical info associated with CPTAC3 cases

    ding-lab/GDC.case.discover’s past year of commit activity
    Shell 1 GPL-3.0 2 0 0 Updated Sep 4, 2025
  • mushroom Public

    A computational tool for identification of 3D multi-modal spatial neighborhoods

    ding-lab/mushroom’s past year of commit activity
    Jupyter Notebook 14 MIT 1 1 0 Updated Jul 31, 2025
  • ONTsplice Public

    pipeline for processing ONT RNA-Seq data

    ding-lab/ONTsplice’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 19, 2025
  • SenNet_liver Public
    ding-lab/SenNet_liver’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 10, 2025
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