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1. fastqc fastqc Public

   Forked from csf-ngs/fastqc

   csf fork of fastqc for usage on selected reads of unaligned bam file

   Java

2. htslib htslib Public

   Forked from samtools/htslib

   C library for high-throughput sequencing data formats

   C

3. sra-tools sra-tools Public

   Forked from ncbi/sra-tools

   SRA Tools

   C

4. STAR STAR Public

   Forked from alexdobin/STAR

   RNA-seq aligner

   C

5. TrimGalore TrimGalore Public

   Forked from FelixKrueger/TrimGalore

   A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

   Perl

6. RNA-Seq_pipeline RNA-Seq_pipeline Public

   Shell 2