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bioseq Public
Tokenizers and Machine Learning Models for biological sequence data
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sketch Public
C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
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dashing2 Public
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
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bonsai Public
Bonsai: Fast, flexible taxonomic analysis and classification
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minicore Public
Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.
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dashing Public
Fast and accurate genomic distances using HyperLogLog
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libsimdsampling Public
Data- and processor- parallelism for fast weighted sampling
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pathml Public
Forked from Dana-Farber-AIOS/pathmlTools for computational pathology
Python GNU General Public License v2.0 UpdatedDec 8, 2021 -
minicore-experiments Public
Experiments for minicore: fast scRNA-seq clustering with various distances
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einops Public
Forked from VasanthakumarV/einopsSimplistic API for deep learning tensor operations
Rust UpdatedSep 3, 2021 -
minilsh Public
Python bindings for Locality-Sensitive Hashers, built on the minicore C++ library.
C++ UpdatedAug 10, 2021 -
fastiota Public
Fast std::iota for contiguous memory using SIMD operations
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rust-tokenizers Public
Forked from guillaume-be/rust-tokenizersRust-tokenizer offers high-performance tokenizers for modern language models, including WordPiece, Byte-Pair Encoding (BPE) and Unigram (SentencePiece) models
Rust Apache License 2.0 UpdatedJul 14, 2021 -
libkl Public
Kernels for fast vectorized KL divergence + related
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ProtTrans Public
Forked from agemagician/ProtTransProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Jupyter Notebook Academic Free License v3.0 UpdatedMay 17, 2021 -
libtorch-kseq-demo Public
Demo using libtorch and one-hot encoding for fastx files
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMar 25, 2021 -
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distmat Public
2-dimensional distance matrix for holding distances of arbitrary types.
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vec Public
Type-generic SIMD library for optimized generic code generation
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megadepth Public
Forked from ChristopherWilks/megadepthBigWig and BAM utilities
C++ Other UpdatedNov 9, 2020 -
aesctr Public
C++ implementation of AES-CTR PRNG using SIMD, based on Samuel Neves' Implementation
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