Open Source Reimplementation of Google Deepmind's Co-Scientist

Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

A Patch for GIMP 3+ for Photoshop Users

mini cli search engine for your docs, knowledge bases, meeting notes, whatever. Tracking current sota approaches while being all local

EdegQuake 🌋 High-performance GraphRAG inspired from LightRag written in Rust; Transform documents into intelligent knowledge graphs for superior retrieval and generation

Agent skill that removes signs of AI-generated writing from text

❗ This is a read-only mirror of the CRAN R package repository. BiTrinA — Binarization and Trinarization of One-Dimensional Data

Protein languege understanding

verl/HybridFlow: A Flexible and Efficient RL Post-Training Framework

LoRA finetuned LLM for single cell genomics research

An All-in-One Platform for Biomedical Data Integration and Knowledge Graph Generation

UCE is a zero-shot foundation model for single-cell gene expression data

Unified Efficient Fine-Tuning of 100+ LLMs & VLMs (ACL 2024)

Awesome GRN enhanced AnnData toolkit

NVIDIA Digital Biology examples for optimized inference and training at scale

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

State is a machine learning model that predicts cellular perturbation response across diverse contexts

Official source code of HELM, a family of fully hyperbolic large language models

DHG-Bench is a comprehensive benchmark for Deep Hypergraph Learning

[ACL 2026 Main] Repo for paper "ReasonRank: Empowering Passage Ranking with Strong Reasoning Ability"

Build Real-Time Knowledge Graphs for AI Agents

Comprehensive suite for evaluating perturbation prediction models

Official pytorch implementation of the paper [Salience-Based Adaptive Masking: Revisiting Token Dynamics for Enhanced Pre-training]