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awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedAug 22, 2025 -
Marlene Public
Marlene, a method to recover temporal gene regulatory networks.
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SenSet Public
Code to generate SenSet, a novel human lung senescence cell gene signature.
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euxhenh.github.io Public template
Forked from alshedivat/al-folioMy personal page
HTML MIT License UpdatedJun 29, 2025 -
jsonargparse Public
Forked from omni-us/jsonargparseImplement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables
Python MIT License UpdatedJun 10, 2025 -
grinch Public
A library for differential expression and gene set enrichment analysis based on hydra and pydantic.
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Truffle Public
Trajectory Inference of clinical data via Multi-commodity Flow
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phenotype-cover Public
A package for biomarker selection based on multiset multicover and the cross-entropy-method.
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cellar Public
Interactive software tool for the assignment of cell types in single-cell studies.
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automl-decathlon-2022-eh Public
Fourth place submission to the AutoML Decathlon Competition 2022.
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phenotype-cover-experiments Public
This repository contains the code for experiments in "Multiset multicover methods for discriminative marker selection"
Jupyter Notebook UpdatedNov 11, 2022 -
multiset-multicover Public
Multiset multicover using the extended greedy cover algorithm implemented in C++ and exposed to Python.
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CSES-Solutions Public
My solutions to the CSES Problem Set: https://cses.fi/
C++ UpdatedApr 13, 2021 -
BinToGene Public
A tool for replacing promoter accessibility with a gene activity score.
Python MIT License UpdatedJan 4, 2021 -
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ML-Algorithms Public
Various ML algorithms implemented from scratch.
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ConstrainedKMeans Public
Constrained KMeans algorithm.
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Cluster_Ensembles Public
Forked from GGiecold-zz/Cluster_EnsemblesA package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation…
C MIT License UpdatedJul 7, 2020 -
category-theory Public
Notes, solved exercises, cheatsheet on category theory.
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