GenBio-PathFM is a histopathology foundation model from GenBio AI.

A compact Mission Control Spaces pager for the macOS menu bar

An autonomous agent for deep financial research

Illico is a python library performing fast and lightweight wilcoxon rank-sum tests for single-cell RNASeq.

🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.

Hyperbolic Graph Convolutional Networks in PyTorch.

EasyFigAssembler simplifies the assembly of publication-quality scientific figures. It helps free scientists from technical burdens, so we can focus more on science.

Foundation Model for Materials - FM4M

PyTorch Geometric Signed Directed is a signed/directed graph neural network extension library for PyTorch Geometric. The paper is accepted by LoG 2023.

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

A high-performance Python-based I/O system for large (and small) deep learning problems, with strong support for PyTorch.

AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt pretrained models and generate finetuned models for downstr…

AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels

Minimal effort CLIs derived from type hints and parse from command line, config files and environment variables

Model interpretability and understanding for PyTorch

Graphs for Everyone

The break time reminder app

The Universal Storage Engine

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

starter from "How to Train a GAN?" at NIPS2016

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

Hopfield Networks is All You Need

DeepProbLog is an extension of ProbLog that integrates Probabilistic Logic Programming with deep learning by introducing the neural predicate.

Automatic neural network visualizations generated in your browser!

Trajectory Inference of clinical data via Multi-commodity Flow

Pytorch implementation of set transformer

Python package built to ease deep learning on graph, on top of existing DL frameworks.

BEELINE: evaluation of algorithms for gene regulatory network inference

Chromosome polymer simulations and in silico capture experiments