Lists (18)
AI-Assistant
Cell-Cell Interactions
Clustering
Genomics
Hobbies
Machine-Learning
Metabolic-Analysis
Microbiomes
Networks
Pytorch-based-Tools
Quantum-Computing
Repos useful to start learning analysis/development for quantum computingSingle-Cell-Transcriptomics
Spatial-Embedding
Spatial-Transcriptomics
Statistics
Structural-Biology
Utilities
Visualization
Stars
A public MuSpAn page for community discussions and issue reporting.
Python Reimplementation of the soupx scRNA ambient removal package
Robust and scalable single-cell signature scoring
dbdimitrov / spatial-prop
Forked from abuendia/spatial-propTissue perturbation modeling with spatially resolved single-cell transcriptomics
Fast genomics quality control tools for sequencing data, written in Rust.
An AnnData-based framework for integrated proteomics analysis
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Vim-fork focused on extensibility and usability
NDEx application code examples in Jupyter notebooks
Metric learning-based graph-partitioned trajectory inference from single-cell data
Official code repo for the O'Reilly Book - "Hands-On Large Language Models"
MCP server for spatial transcriptomics analysis through natural language interfaces.
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
π RuView turns commodity WiFi signals into real-time spatial intelligence, vital sign monitoring, and presence detection — all without a single pixel of video.
GitNexus: The Zero-Server Code Intelligence Engine - GitNexus is a client-side knowledge graph creator that runs entirely in your browser. Drop in a git repository (Github, Gitlab, Azure, Local) or…
A minimal PyTorch re-implementation of AlphaFold2's model & training
Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
Attach and AnnData file in duckdb and query it with SQL. Perform SQL over groups of AnnData files
Hands-on AlphaFold implementation for educational purposes.
Paper2Agent is a multi-agent AI system that automatically transforms research papers into interactive AI agents with minimal human input.
Democratizing AI scientists with ToolUniverse
Biomni: a general-purpose biomedical AI agent