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  1. HP3 HP3 Public

    Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975

    HTML 15 6

  2. diagnostic-dashboard diagnostic-dashboard Public

    GRITS uses natural language processing to extract disease-related information from text, including disease names, symptoms, dates, locations, case and death counts, and more.

    JavaScript 6

  3. flirt flirt Public

    FLIRT uses airline flight schedule data to map the commercial flight network. It shows direct flights from a selected location, and can simulate passengers taking multi-leg itineraries.

    JavaScript 8

  4. eidr-connect eidr-connect Public

    EIDR Connect takes the data extracted by GRITS and structures it to reconstruct disease events as they are reported across different documents.

    CoffeeScript 1

  5. EpiTator EpiTator Public

    EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

    Python 43 10

Repositories

Showing 10 of 198 repositories
  • awesome-parasite Public

    A curated list of host-parasite information

    ecohealthalliance/awesome-parasite's past year of commit activity
    64 4 10 0 Updated May 28, 2026
  • SADSr-CoVs Public

    Code to perform species distribution modeling for Latinne et al. "Diversity and spillover risk of Swine Acute Diarrhea Syndrome and related coronaviruses in China and Southeast Asia"

    ecohealthalliance/SADSr-CoVs's past year of commit activity
    R 0 1 0 0 Updated May 28, 2025
  • acdc-db-handbook Public

    Africa CDC Database Handbook

    ecohealthalliance/acdc-db-handbook's past year of commit activity
    R 1 2 7 0 Updated Mar 25, 2025
  • eha-ma-handbook Public

    EcoHealth Alliance Modeling & Analytics Handbook

    ecohealthalliance/eha-ma-handbook's past year of commit activity
    HTML 5 15 46 0 Updated Mar 20, 2025
  • ecohealthalliance.r-universe.dev Public

    An R-Universe for EcoHealth Alliance Packages

    ecohealthalliance/ecohealthalliance.r-universe.dev's past year of commit activity
    1 MIT 0 0 0 Updated Mar 1, 2025
  • acdc-next-steps Public

    Africa CDC One Health Database Next Steps

    ecohealthalliance/acdc-next-steps's past year of commit activity
    R 2 1 0 0 Updated Nov 26, 2024
  • ehallm Public

    What the Package Does (Title Case)

    ecohealthalliance/ehallm's past year of commit activity
    R 1 1 1 0 Updated Nov 7, 2024
  • github-archive Public

    organizational archive for github

    ecohealthalliance/github-archive's past year of commit activity
    R 1 MIT 0 0 0 Updated Sep 18, 2024
  • ecohealthalliance/serology_methods_sims's past year of commit activity
    R 0 0 0 0 Updated Sep 12, 2024
  • rig-slides Public
    ecohealthalliance/rig-slides's past year of commit activity
    R 0 0 0 0 Updated Sep 4, 2024