iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Truly parallel gzip decompression

Hidden Markov Model based Copy number caller

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Fast and frugal disk based k-mer counter

grep on CUDA

Pairing reads on genome graphs

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

STXXL: Standard Template Library for Extra Large Data Sets

PBSIM3: a simulator for all types of PacBio and ONT long reads

`std::execution`, the proposed C++ framework for asynchronous and parallel programming.

Tool for parsing and converting between alternate representations of phased assemblies in GFA format