RWKV is a RNN with transformer-level LLM performance. It can be directly trained like a GPT (parallelizable). So it's combining the best of RNN and transformer - great performance, fast inference, …

Plain pytorch implementation of LLaMA

Scalable Bloom Filter implemented in Python

The ARTIC fieldbioinformatics pipeline

minimal example implementations for bioinformatics workflow managers

Python package and routines for merging SV VCF files

A tuning dictionary available to use in FoxDot

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python

HGVS variant name parsing and generation with SV (structural variant) support

A method to identify structural variation from sequencing data in target regions (Abo et al.)

Utils for streaming large files (S3, HDFS, gzip, bz2...)

Lesson for the shell for genomics

Read visualizer for structural variants