-
tensorflow Public
Forked from tensorflow/tensorflowOpen source software library for numerical computation using data flow graphs.
C++ Apache License 2.0 UpdatedDec 9, 2015 -
smithwaterman Public
Forked from ekg/smithwatermansmith-waterman-gotoh alignment algorithm
C++ UpdatedNov 13, 2015 -
stream Public
Forked from vgteam/streamcompressed protobuf streaming C++ headers library
C++ MIT License UpdatedNov 10, 2015 -
lru_cache Public
Forked from ekg/lru_cacheA thread-safe LRU cache implementation in C++
C++ UpdatedNov 10, 2015 -
gssw Public
Forked from vgteam/gsswefficient alignment of strings to partially ordered string graphs
C UpdatedNov 4, 2015 -
sdsl-lite Public
Forked from simongog/sdsl-liteSuccinct Data Structure Library 2.0
C++ Other UpdatedNov 2, 2015 -
BioSandbox Public
Tools, scripts and programs for playing with biological data
Python UpdatedAug 28, 2015 -
miRNA_Distributions Public
Scripts and code pertaining to "Human microRNAs Exhibit Two Distributions Within and Across Cancer Samples"
TeX UpdatedMay 8, 2015 -
Ref_VCF_Builder Public
A little bit of BASH to create a single standard reference VCF from several smaller ones.
C UpdatedApr 27, 2015 -
-
svsim Public
Forked from mfranberg/svsimSimulation toolbox for structural variations.
Python Other UpdatedMar 31, 2015 -
bwa-0.7.10 Public
Forked from mwvaughn/bwa-0.7.10Reference bwa aln implementation for Agave API
Shell UpdatedFeb 17, 2015 -
-
iPlant-GATK-QC Public
The scripts and JSON description necessary to produce a working iPlant version of GATK Realignment/Recalibration.
Shell UpdatedJan 5, 2015 -
iPlant-Platypus Public
Contains the necessary files to create a working version of Platypus on iPlant
Shell UpdatedJan 5, 2015 -
iPlant-samtools-mpileup Public
The scripts and JSON descriptions necessary to run samtools mpileup on Stampede using iPlant
-
iPlant-BWA-MEM-Parallel Public
A wrapper for increasing scaling of BWA.
-
-
Split-Splice-FASTQ Public
A bit of python for slicing and splicing FASTA/FASTQ files.
-
iPlant-BWA-Index Public
Contains all of the bits and pieces needed to integrate BWA indexing into the iPlant environment.
Shell UpdatedSep 28, 2014 -
Firehose Public
A collection of scripts for munging genomic and epigenetic data from the Broad Firehose.
Python GNU General Public License v2.0 UpdatedSep 7, 2014 -
-
-
-
goanna-connect Public
Forked from mwvaughn/goanna-connectAdapter script to integrate AgBase GoAnna resource with iPlant DE
Perl UpdatedDec 17, 2012 -
affinity-propagation-sparse Public
Forked from nojima/affinity-propagation-sparseAffinity Propagation with Sparse Similarities
C++ UpdatedOct 30, 2010
{{ message }}