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The world’s fastest framework for building websites.

Go 87,289 8,224 Updated Mar 26, 2026

Porting Grav Learn theme to Hugo

HTML 1,618 1,263 Updated Jun 15, 2024

Versatile open-source tool for microbiome analysis

C++ 742 132 Updated Mar 16, 2026

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

Python 373 62 Updated Feb 13, 2025

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …

C++ 270 30 Updated Feb 23, 2026

Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)

C++ 232 19 Updated Jan 4, 2026

NOVOPlasty - The organelle assembler and heteroplasmy caller

Perl 198 72 Updated Feb 4, 2024

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

C++ 159 15 Updated Mar 6, 2026

A tool to identify, orient, trim and rescue full length cDNA reads

Python 85 23 Updated Jul 4, 2022

Interactive assembly and analysis of RAD-seq data sets

Jupyter Notebook 80 40 Updated Mar 3, 2026

Building SuperTranscripts: A linear representation of transcriptome data

Python 67 21 Updated Mar 22, 2021

Coding Genome Reconstruction using Iso-Seq data

Python 61 17 Updated Oct 20, 2021

Curated list of bioinformatics formats and publications

54 4 Updated Mar 18, 2019

A package for population structure inference from RAD-seq data

C++ 35 8 Updated May 14, 2021

Assembly and analysis of RADseq data sets

Python 27 16 Updated Aug 22, 2016

Manipulate and generate figures for trees in Newick format

C++ 22 1 Updated Jul 31, 2025

R course in Ilhabela, Brazil, June 2015

HTML 7 7 Updated Jul 5, 2015

Simple program for in silico restriction digest of genomic sequences, to simulate RAD-family NGS library prep methods

Perl 6 5 Updated Jul 26, 2019