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Captus Public
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
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captus.docs Public
Documentation and tutorials for Captus: https://github.com/edgardomortiz/Captus
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NanoAmp Public
Species identification via Nanopore sequencing of barcoded amplicons
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedDec 18, 2024 -
vcf2phylip Public
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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ipyrad Public
Forked from dereneaton/ipyradInteractive assembly and analysis of RAD-seq data sets
Jupyter Notebook GNU General Public License v3.0 UpdatedApr 16, 2021 -
Bandage Public
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
C++ GNU General Public License v3.0 UpdatedMar 15, 2021 -
fineRADstructure-tools Public
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
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sam2consensus Public
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
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paralog-finder Public
Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
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HybPiper Public
Forked from mossmatters/HybPiperRecovering genes from targeted sequence capture data
Python GNU General Public License v3.0 UpdatedJan 30, 2018 -
pyrad Public
Forked from dereneaton/pyradModifed version of pyrad to finish large assemblies from ipyrad that are stuck in step 6
Python GNU General Public License v3.0 UpdatedOct 24, 2017 -
rad-gatk Public
Tools to obtain locus-based statistics from RADseq data analyzed with GATK
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ddrad_tools Public
Forked from stevemussmann/ddrad_toolsA collection of tools designed for working with ddRAD data.
Perl GNU General Public License v3.0 UpdatedSep 11, 2017 -
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