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6 stars written in Java
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RTG Tools: Utilities for accurate VCF comparison and manipulation

Java 329 52 Updated May 27, 2025

Jasmine: SV Merging Across Samples

Java 233 18 Updated Dec 20, 2024

Simple test framework for Nextflow pipelines

Java 173 36 Updated Nov 3, 2025

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Java 81 11 Updated Apr 1, 2024

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

Java 39 4 Updated Nov 28, 2025

A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

Java 16 7 Updated Sep 6, 2025