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3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
Machine learning metrics for distributed, scalable PyTorch applications.
Source code and content for pascalmichaillat.org
Python 3.8+ toolbox for submitting jobs to Slurm
PyTorch3D is FAIR's library of reusable components for deep learning with 3D data
[ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis
DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning
Neural networks for cryo-EM reconstruction
Pretrain, finetune ANY AI model of ANY size on 1 or 10,000+ GPUs with zero code changes.
Tool for robust segmentation of >100 important anatomical structures in CT and MR images
Unbearably fast near-real-time pure-Python runtime-static type-checker.
🐍 Geometric Computer Vision Library for Spatial AI
The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (V…
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
JupyterLab desktop application, based on Electron.
Web-based 3D visualization + Python
A comprehensive opensource software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.
MIT IAP short course: Matrix Calculus for Machine Learning and Beyond
Type annotations and runtime checking for shape and dtype of JAX/NumPy/PyTorch/etc. arrays. https://docs.kidger.site/jaxtyping/
Operator Discretization Library https://odl.readthedocs.io/
A JupyterLab extension for displaying cell timings
A 3D Slicer extension for efficient segmentation with nnInteractive.
Trame lets you weave various components and technologies into a Web Application solely written in Python.
Astro template to help you build an interactive project page for your research paper