Advanced Normalization Tools (ANTs)

ASTRA Tomography Toolbox

ITK-SNAP medical image segmentation tool

A comprehensive opensource software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

2D/3D registration between CT/MRI or STL models and X-ray images (November 2018)

Library and executables for modeling and registration applications in medical image analysis. Particular emphasis on intraoperative fluoroscopic (X-ray) navigation via 2D/3D registration.

Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)

Very fast greedy diffeomorphic registration code

Code for the registration component of the IPCAI 2020 paper: "Automatic Annotation of Hip Anatomy in Fluoroscopy for Robust and Efficient 2D/3D Registration." https://arxiv.org/abs/1911.07042 or ht…

Convert3D tool

Consistency Conditions for any two X-ray images.

A C++ visual studio application for reconstructing a 3D vesselness volume from 2D DSA images. It is assumed the DSA images have been segmented using the VESCL contouring library to generate annotat…

A C++ library for computer-assisted segmentation of vessels in 2D medical images and a sample Qt/OpenGL application.