An agentic skills framework & software development methodology that works - Claude Code task management support

One local control plane for every AI agent: route across models, fuse new capabilities, orchestrate tools, and stay fully in control.

Proxy that exposes Antigravity provided claude / gemini models, so we can use them in Claude Code and OpenClaw (Clawdbot)

Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention matrices of the encoder.

The simplest, fastest repository for training/finetuning medium-sized GPTs.

Deep learning + physical modeling for 3D protein metal ion binding prediction

Deep learning based cryoEM density map feature enhancement

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)

List of papers about Proteins Design using Deep Learning

SurvSHAP(t): Time-dependent explanations of machine learning survival models

Explaining the output of machine learning models with more accurately estimated Shapley values

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

A lightweight package for chunking iterables

The programs for preprocessing cryo-EM density maps for machine learning

Making Protein folding accessible to all!

Benchmarking large language models' complex reasoning ability with chain-of-thought prompting

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

Research on Tabular Deep Learning: Papers & Packages

Neural networks for cryo-EM reconstruction

f.k.a. Awesome ChatGPT Prompts. Share, discover, and collect prompts from the community. Free and open source — self-host for your organization with complete privacy.

Tensor network based quantum software framework for the NISQ era

Alternative Twitter front-end

Deep learning for cryo-EM maps post-processing

Optimizing AlphaFold Training and Inference on GPU Clusters

Windows alt-tab on macOS

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Open source package for Survival Analysis modeling