Stars
ion-level recovery of missing values for DIA proteomics
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
A simple python interface to store and interact with knowledge graphs in your favourite NoSQL DB
Container runtimes on macOS (and Linux) with minimal setup
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply …
Python package for creating interactive and static visualizations of multi-omics data
A light-weight, flexible, and expressive statistical data testing library
🔬 Path to a free self-taught education in Bioinformatics!
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Joyplots in Python with matplotlib & pandas 📈
Workshop: Tackling peptide identification ambiguity with machine learning
📚 Parameterize, execute, and analyze notebooks
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Exercises and supplementary material for the machine learning operations course at DTU.
web-based protein structure viewer and analysis tool interactively or in batch mode
An introductory course to Python by the Center of Health Data Science (University of Copenhagen)
This is the development home of the workflow management system Snakemake. For general information, see
load an image from lif file as a numpy array
Statistical package in Python based on Pandas
Statsmodels: statistical modeling and econometrics in Python
The fastai book, published as Jupyter Notebooks