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1. CellWhisperer CellWhisperer Public

   CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets

   Jupyter Notebook 172 20

2. MrBiomics MrBiomics Public

   MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses

   R 148 2

3. atacseq_pipeline atacseq_pipeline Public

   Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

   Python 93 2

4. enrichment_analysis enrichment_analysis Public

   A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

   Python 71 3

5. unsupervised_analysis unsupervised_analysis Public

   A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

   Python 61 4

6. dea_limma dea_limma Public

   A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.

   R 57 2