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9 followers · 11 following
  • İzmir Türkiye

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Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: Pull Shark

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: Pull Shark

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erdikilic/README.md

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About Me

Bioinformatics specialist based in İzmir, Turkey. I build and automate genomics pipelines — WES/WGS variant calling, microbiome analysis, and beyond. I work across workflow engines (Nextflow, Snakemake, WDL, CWL) and develop high-performance bioinformatics tools in Python and Rust.

Workflow Engines

Nextflow Snakemake WDL CWL

AI Tools

Claude Code Codex

Languages

ML & Data Science

PyTorch JAX Hugging Face Keras NumPy Pandas Polars scikit-learn XGBoost Matplotlib Seaborn Jupyter

Containers & Environments

Podman

Dev & CI/CD

Writing & Docs

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  1. whittle whittle Public

    whittle: coordinate-consistent trimming of long-read uBAM and tagged FASTQ

    Rust 3

  2. amplirust amplirust Public

    A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.

    Rust 19

  3. gatk-germline-workflow gatk-germline-workflow Public

    A comprehensive Whole Exome Sequencing (WES) pipeline that processes raw FASTQ files to variant calls (VCF) following GATK Best Practices. Available in three implementations: Bash, Snakemake, and N…

    Nextflow 2