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Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Repository to host tool-specific module files for the Nextflow DSL2 community!
Cutting edge AI technology for automated audio transcription. A nice GUI for OpenAIs Whisper and pyannote (speaker identification)
A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.
A terminal spreadsheet multitool for discovering and arranging data
iTerm2 is a terminal emulator for Mac OS X that does amazing things.
Boost LaTeX typesetting efficiency with preview, compile, autocomplete, colorize, and more.
Virtual whiteboard for sketching hand-drawn like diagrams
A DSL for data-driven computational pipelines
Test data to be used for automated testing with the nf-core pipelines
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
A library of free open source icons for science illustrations in biology and chemistry
refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Fabric is an open-source framework for augmenting humans using AI. It provides a modular system for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.
Reference implementation of the ChordPro standard for musical lead sheets.
Call and score variants from WGS/WES of rare disease patients.
⚡ Dynamically generated stats for your github readmes
A tool to create visual HTML reports from collections of CSV/TSV tables
Pipeline to fetch metadata and raw FastQ files from public databases
This repository contains the homepage of the KohlbacherLab.