Lists (3)
Stars
Agent skills for Obsidian. Teach your agent to use Markdown, Bases, JSON Canvas, and use the CLI.
A collection of self-made skills for autonomous agents and a reference for useful third-party skills.
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
Grader Service offers lecturers and students a well integrated teaching environment for data science, machine learning and programming classes.
Command line tool for Wave containers provisioning service
Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows
A tool to standardize VCF files from structural variant callers
Analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number aberations for precision cancer medicine.
Generate input samplesheet file compatible with nf-core pipelines from FASTQ files in a given AWS S3 bucket or a local directory
A simple app to get songs from YouTube in mp3 format with artist name, album name etc from sources like iTunes, Spotify, LastFM, Deezer, Gaana etc.
v2.x of the microassembly based somatic variant caller
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
Fast retrieval of metadata and fastq files with ffq and aria2
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…