Lists (3)
Stars
A tool to standardize VCF files from structural variant callers
Analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using PCGR
Generate input samplesheet file compatible with nf-core pipelines from FASTQ files in a given AWS S3 bucket or a local directory
A simple app to get songs from YouTube in mp3 format with artist name, album name etc from sources like iTunes, Spotify, LastFM, Deezer, Gaana etc.
v2.x of the microassembly based somatic variant caller
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
Fast retrieval of metadata and fastq files with ffq and aria2
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Simulation and variant calling in paired-end, targeted sequencing saturation mutagenesis data.
NGS read simulator to eliminate read nucleotide bias in sequence analysis.
a novel next-generation sequencing simulator using position and genomic contexts based error profiles
NGSNGS: Next generation simulator for next generation sequencing data
A terminal spreadsheet multitool for discovering and arranging data
A GitHub action to build an html preview from an RO Crate and publish to the gh-pages branch
Scripts for deploying nf-core pipelines and testing new Nextflow plugins against them.
A Rust library for defining RO-Crates (https://www.researchobject.org/ro-crate/1.1/) for research data.
Virtual whiteboard for sketching hand-drawn like diagrams
⚡ Dynamically generated stats for your github readmes