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7 stars written in Java
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A Tool to Annotate and Prioritize Exome Variants

Java 254 65 Updated Apr 1, 2026

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Java 93 31 Updated Oct 3, 2024

A genome alignment and visualization system

Java 33 7 Updated Nov 15, 2020

ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

Java 23 7 Updated Jan 28, 2025

A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.

Java 21 11 Updated Jun 26, 2023

Command line tool for Wave containers provisioning service

Java 19 4 Updated Apr 9, 2026

A Java/JNR based FUSE virtual file system client to provide access to authorized EGA files via the EGA Data REST API (v3)

Java 6 7 Updated Nov 13, 2025