Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

Python OncoPrint library based on Matplotlib

A tool for creating resource prediction models for scientific workflows

AMAS (Automatic Model Annotation System): (currently) predicting annotations of species and reactions of models in SBML format.

Guiding the refinement of biochemical knowledgebases with ensembles of metabolic networks and machine learning.

Python scripts, that aid in the construction of genome-scale metabolic models (GEMs), after a draft with CarveMe.

Curate genome-scale metabolic models using MEMOTE, cobrapy, and cometspy.