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AI agents running research on single-GPU nanochat training automatically

Python 58,935 8,168 Updated Mar 26, 2026

Minimal Claude Code alternative. Single Python file, zero dependencies, ~250 lines.

Python 2,193 205 Updated Jan 14, 2026

Android feed reader app

Kotlin 2,742 179 Updated Mar 26, 2026

The best ChatGPT that $100 can buy.

Python 50,529 6,623 Updated Mar 27, 2026

Desafio 5 da Segunda Fase da LBB 2025. Exploramos abordagens envolvendo bioinformática aplicada e análise de dados para investigar a resposta de bactérias a antibióticos e o perfil de expressão gên…

1 Updated Sep 21, 2025

Desafio 4 da Segunda Fase da LBB 2025. Desenvolvemos e treinamos modelos de machine learning que classificam sequências de RNA como mRNA ou ncRNA.

1 Updated Sep 21, 2025

Desafio 2 da Segunda Fase da LBB 2025. Exploramos a manipulação de arquivos PDB, análise de interações moleculares (como ligações de hidrogênio) e a validação de modelos de proteínas.

Python 1 Updated Sep 21, 2025

Desafio 3 da Segunda Fase da LBB 2025. Desenvolvemos um pipeline para realizar screening de atividade transcricional em 500 cepas de E. coli. Nossa solução foi baseada na busca e cálculo de distân…

Python 1 Updated Sep 21, 2025

Desafio 1 da Segunda Fase da LBB 2025. Desenvolvemos modelos de Deep Learning para resolver o problema de classificação de partículas Cryo-EM, utilizando abordagens supervisionadas e não supervisio…

Python 1 Updated Sep 21, 2025

CoNekT Grasses

Python 5 1 Updated Mar 25, 2026

MMseqs2: ultra fast and sensitive search and clustering suite

C 2,010 278 Updated Mar 9, 2026

Fast genome-wide functional annotation through orthology assignment

Python 715 119 Updated Mar 24, 2026

TransDecoder source

Perl 302 64 Updated Mar 22, 2026

Understand your transcriptome assembly

Ruby 102 34 Updated Mar 22, 2024

Trinity RNA-Seq de novo transcriptome assembly

Perl 885 320 Updated Feb 7, 2025

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Jupyter Notebook 523 62 Updated Mar 27, 2026

A scientific image processing software suite with a focus on CryoEM and CryoET

Python 166 58 Updated Mar 20, 2026

COCαDA (COntact search pruning by Cα Distance Analysis) is a fast and efficient algorithm for identifying interatomic contacts using flexible distance cutoffs derived from the whole Protein Data Ba…

Python 1 2 Updated Mar 27, 2026

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

Python 4,985 2,435 Updated Mar 28, 2026

Nextflow pipeline for microbiome–transcriptome integration

R 4 2 Updated Aug 21, 2025
Python 760 87 Updated May 22, 2023

Multi-genotype analyses of long-ncRNAs in Sugarcane

Roff 3 Updated May 1, 2025

Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials" (Fernandes et. al 2024)

Python 19 11 Updated Jul 23, 2024

Curso de Extensão: Introdução à Genômica e Bioinformática

Shell 5 Updated Nov 25, 2024

Reinforcement Learning in Fortnite With Real-Time Screen Capture and Windows Input Simulation

Python 106 13 Updated Jan 20, 2025

Collection of scripts and utilities for gene co-expression network analysis

R 1 1 Updated Apr 27, 2024

The second version of the Kraken taxonomic sequence classification system

C++ 887 301 Updated Mar 24, 2026
TeX 2 7 Updated Feb 12, 2026
Nextflow 3 4 Updated Aug 14, 2025
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