This library can convert a pydantic class to a avro schema or generate python code from a avro schema.

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Data intensive science for everyone.

Code formatter for Scala

Classifier for metagenomic sequences

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy and maintain. Automate everything from code deployment to network configuration to clo…

A Java API for high-throughput sequencing data (HTS) formats.

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Analysis toolkit and programming library for k-mer profiles

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Biopet docs

C++ API & command-line toolkit for working with BAM data