Fast genomics quality control tools for sequencing data, written in Rust.

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

Evaluate variant calls and its combination with k-mer multiplicity

lumpy: a general probabilistic framework for structural variant discovery

Genome Interval Arithmetic in R

Collection of low-level functions for working with vctrs

Tidy Plots for Scientific Papers

The web framework for content-driven websites. ⭐️ Star to support our work!

Finding Recurrent Substitutions in Multiple Sequence Alignments

Tool for drawing gene structures from genome annotation files.

Genome alignment and synteny plots

The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.

Structural variation and indel detection by local assembly

A tutorial on structural variant calling for short read sequencing data

High Performance GWAS Plotting and Annotation

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

A scientific plotting library in Rust

Phylogenetic orthology inference for comparative genomics

Synteny and Rearrangement Identifier

netZooR is a network biology package implemented in R.

netZooPy is a network biology package implemented in Python.

UpSet - Visualizing Intersecting Sets

A 'ggplot2' implement of Venn Diagram.

Ggplot picture previewer

Algorithm For Gene Order Reconstruction in Ancestors

Decorate a plot with associated information