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@quentinblampey quentinblampey commented Dec 3, 2025

Solve an issue when:

  1. Using 3D points with an Affine transformation
  2. Then saving on disk
  3. Then running segmentation

Afterwards, it creates a weird (x, y) -> (z, x, y) transformation that can't be used. This issue solve this (a fix in SpatialData directly may be considered)

Related SpatialData issue: scverse/spatialdata#736

@quentinblampey quentinblampey merged commit 590614b into main Dec 3, 2025
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@quentinblampey quentinblampey deleted the ensure_2d branch December 3, 2025 16:59
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2 participants