Conda recipes for the bioconda channel.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Deep probabilistic analysis of single-cell and spatial omics data

scikit-learn: machine learning in Python

Elyra extends JupyterLab with an AI centric approach.

Deep Learning for humans

Mondo Disease Ontology

Better Scientific Software Homepage

The Fast Cross-Platform Package Manager

Single cell Morphology Quality Control (coSMicQC)

An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

Source for the IDR static website.

Python package for processing image-based profiling data

An open-source application for biological image analysis

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Set up your GitHub Actions workflow with conda via miniconda

Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

An open source extension that connects AI agents to computational notebooks in JupyterLab.

GitHub Action that uploads coverage to Codecov ☂️

A Grammar of Graphics for Python

Curated Metagenomic Data of the Human Microbiome

An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

Bioconductor package for management of multi-assay data

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

Utility scripts for managing IDR submissions

This Nextflow workflow main.nf performs a high-level quality check on tools.

Find profile pairs and compute retrieval metrics between them.