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Python 2 Updated Apr 7, 2026

A Python package to flexibly aggregate ChEMBL data into ML-ready datasets using configurable quality filters

Python 9 2 Updated Aug 4, 2026

My blog website.

JavaScript 524 40 Updated Sep 22, 2026

clone/update of pyppm to modern kicad and new parts

C 1 Updated Jul 25, 2026

Protein sequence-structure codesign

Python 1 Updated Jan 22, 2026

Interaction Fingerprints for protein-ligand complexes and more

Python 542 104 Updated Sep 20, 2026

A high-performance toolkit for atomistic simulations in JAX.

Python 233 22 Updated Sep 18, 2026

Calculation of Product Operator for Nuclear Magnetic Resonance Spectroscopy Using Python

Python 9 1 Updated Sep 9, 2026

Official repository for the Boltz biomolecular interaction models

Python 4,215 900 Updated May 29, 2026

Official PyTorch Implementation of "SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers"

Python 1,214 82 Updated Dec 22, 2025

Efficient Top-K implementation on the GPU

Cuda 192 26 Updated Apr 9, 2019

Source codes used for the experimentation of the paper "Using Heaps on GPU"

Cuda 1 Updated Mar 5, 2024

a CUDA implementation of a priority queue

C++ 85 5 Updated Sep 18, 2020

SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction

Python 256 32 Updated Sep 29, 2025

Benchmark set for relative free energy calculations.

123 34 Updated May 22, 2024

A collection of QM data for training potential functions

Python 204 11 Updated Feb 25, 2026

Computations involving Lie groups and harmonic analysis

Python 208 52 Updated Feb 11, 2025

A modular framework for neural networks with Euclidean symmetry

Python 1,287 188 Updated Feb 13, 2026

End-To-End Molecular Dynamics (MD) Engine using PyTorch

Python 719 88 Updated Apr 21, 2026
C++ 13 Updated Nov 6, 2020

Differentiable, Hardware Accelerated, Molecular Dynamics

Jupyter Notebook 1,463 249 Updated Aug 18, 2026

🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm

Python 21 4 Updated Sep 8, 2018
Python 35 5 Updated Jul 22, 2019

TorchANI 2.0 is an open-source library that supports training, development, and research of ANI-style neural network interatomic potentials. It was originally developed and is currently maintained …

Python 560 139 Updated Sep 6, 2026

A collection of AWESOME things about domain adaptation

5,455 881 Updated Dec 8, 2025

Code release for Transferability vs. Discriminability: Batch Spectral Penalization for Adversarial Domain Adaptation (ICML 2019)

Python 92 17 Updated Jul 23, 2019

Template based C++11 FFT implementation.

C++ 52 4 Updated Jan 26, 2015

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Python 7,010 2,317 Updated Aug 20, 2026

Open source implementation of "Neural Message Passing for Quantum Chemistry"

Python 239 52 Updated Jul 25, 2017
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