Stars
single cell foundation model for Gene network inference and more
Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
Python library for making 3D plots with blender
Create beautiful and awesome websites with the Sphinx documentation generator.
A novel method for single-cell diagonal integration: scConfluence
Rallly is an open-source scheduling and collaboration tool designed to make organizing events and meetings easier.
Code for the paper: "Abide by the Law and Follow the Flow: Conservation Laws for Gradient Flows".
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Molecular interactions inference from single-cell multi-omics data
Survey of all published Carbon Capture ML papers, data, code and supplemental materials for the benefit of all humanity
A package to help convert different single-cell data formats to each other
A utility to be able to launch jobs on JZ with reasonable defaults
Optimal transport tools implemented with the JAX framework, to solve large scale matching problems of any flavor.
https://www.sc-best-practices.org
Analysis notebooks using the moscot package
A community-maintained Python framework for creating mathematical animations.
Rich is a Python library for rich text and beautiful formatting in the terminal.
A pytorch package for non-negative matrix factorization.
Nonlinear measures for dynamical systems (based on one-dimensional time series)
arXiv LaTeX Cleaner: Easily clean the LaTeX code of your paper to submit to arXiv
Work with trained factor models in Python
Python 3.8+ toolbox for submitting jobs to Slurm