Tree-based orthology inference with functionality for reducing contamination

Mosaic Genome Assembler

Successor of bwa-mem for short-read alignment

Recombination Landscape Estimation using Recurrent Neural Networks

BRAKER re-implemented with snakemake

SearXNG is a free internet metasearch engine which aggregates results from various search services and databases. Users are neither tracked nor profiled.

A collection of DESIGN.md files analysis by popular brand design systems. Drop one into your project and let coding agents generate a matching UI.

Package for fetching metadata and downloading data from SRA/ENA/GEO

A new high-resolution long-read metagenome assembler for even noisy reads

Use Codex from Claude Code to review code or delegate tasks.

Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.

Unofficial Python API and agentic skill for Google NotebookLM. Full programmatic access to NotebookLM's features—including capabilities the web UI doesn't expose—via Python, CLI, and AI agents like…

Get your documents ready for gen AI

Open source Ghostty-based macOS terminal with vertical tabs and notifications for AI coding agents. Built for multitasking, organization, and programmability.

👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

⚡A CLI tool for code structural search, lint and rewriting. Written in Rust

Google Workspace CLI — one command-line tool for Drive, Gmail, Calendar, Sheets, Docs, Chat, Admin, and more. Dynamically built from Google Discovery Service. Includes AI agent skills.

A claude code skill to delegate prompts to codex

BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models

Burning through your subscriptions too fast? Paying for stuff you never use? Stop guessing. OpenUsage is free and open source.

The most customizable typing website with a minimalistic design and a ton of features. Test yourself in various modes, track your progress and improve your speed.

PaperBanana: Automating Academic Illustration For AI Scientists

Skills Catalog for Codex

A 5-20x faster experimental Homebrew alternative

User-friendly GUI macOS application for Homebrew Casks

🐹 Clean, uninstall, analyze, optimize, and monitor your Mac from the terminal.

Genomic Annotation Visualization R package.

Ralph is an autonomous AI agent loop that runs repeatedly until all PRD items are complete.