Linear optimization software

Genotype Representation Graph Library

Fortran Standard Library

Estimation of Recombination Rate and Maternal LD in Half-Sibs

Integrative Composable Visualization Framework for ggplot2

This is the public repository for the r-inla project

Model-free inference of tree sequences from unphased genotypes

Python implementation of the methodology of integrated nested Laplace approximations (INLA)

Simulate phenotypic effects on a GRG

Pedigree simulator

Fortran language support for Visual Studio Code

F90 to Python interface generator with derived type support

Population genetic simulations in R

Reproduction package for "Genetic prediction with ARG-powered linear algebra"

inlabru

The Genetic Inheritance Graph library: ARGs with structural variation

R formatter and language server

A library of standard population genetic models

Library to allow calling fortran code from python

Fortran Package Manager (fpm)

Population-scale Ancestral Recombination Graph (ARG) library

Demographic inference from Ancestral Recombination Graphs (ARGs)

A Python package for probabilistic state space modeling with JAX

🤖 Keep your forks up-to-date via automated PRs

Practical Haplotype Graph (PHG) version 2

Run and Analyse SLiM Population Genetics Forward Simulations from R.

Tools for working with pedigrees in R

R packages for pedigree analysis

Python-only parser for Indexable Genotype Data (IGD) format.

The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049