Run and Analyse SLiM Population Genetics Forward Simulations from R.

Tree Approximate Message Passing

A grammar of graphics for comparative genomics

Model-free inference of tree sequences from unphased genotypes

Hierarchical Alignment Format

Computation of pedigree-based relatedness coefficients. Part of the pedsuite ecosystem for pedigree analysis in R

Mutation models for pedigree likelihood computations

HMM Toolkit for Inferring IBD Segments from SNP Genotypes

R packages for pedigree analysis

Tools for working with pedigrees in R

R-package for computing IBD (segment) probabilities for pedigree members

Methods for examining PCA locally along the genome.

Calculates the probability of a haplotype given a population reference panel

Python-only parser for Indexable Genotype Data (IGD) format.

Simulate phenotypic effects on a GRG

Demographic inference from Ancestral Recombination Graphs (ARGs)

Developmental version of HAPI with eventual support for families without parental data

Algorithm for rapid, phase-free detection of long identical by descent segments

Program for calculating phase switch error rate

Pedigree simulator

Python implementation of the methodology of integrated nested Laplace approximations (INLA)

Reproduction package for "Genetic prediction with ARG-powered linear algebra"

R formatter and language server