An algorithm for scoring Generalised RNA Multivalency

A TUI application to explore the tree of life using NCBI taxonomy data

Source code for Apache/mod_wsgi.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

pubScan is an interactive interface to explore all PubMed articles as a co-authorship network.

taxonomic lineage viewer using WASM

MetaTRAnscriptomic growth Classifier

Network Analysis in Python

💫 Display dynamic, automatically organised, customizable network views.

A repository containing the code for Faraway et al. (2025).

A platform for community discussion. Free, open, simple.

pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom geno…

Flask web application for exploring and comparing taxonomic lineages using NCBI taxonomy stored in neo4j

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

motus - a tool for marker gene-based OTU (mOTU) profiling

Fast and Accurate ML in 3 Lines of Code

Graph Neural Network Library for PyTorch

Biomni: a general-purpose biomedical AI agent

Scoring GT/AG sites for improving spliced alignment

Apptainer: Application containers for Linux

TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

Awesome Docker Compose samples

WebGL Globe is a platform for visualizing latitude longitude based information using WebGL.

DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.

Cython bindings and Python interface to HMMER3.