Stars
A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
A dependency-free cross-platform swiss army knife for PDB files.
🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.
Python package to manage protein structures and their annotations
DuckDB is an analytical in-process SQL database management system
Versatile open-source tool for microbiome analysis
An open-access bioinformatics text
Interactive quality assessment of genome assemblies
Quickly search, compare, and analyze genomic and metagenomic data sets.
An updated pipeline for pangenome investigation
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
A Rust library providing fully dynamic sets of k-mers with high locality
DuckDB Extension for reading and writing FASTA and FASTQ Files
DuckDB Extension for working with bioinformatic data.
Turn (almost) any Python command line program into a full GUI application with one line
A macOS GUI front-end for the YT-DLP video downloader
A quick start Create React App template with react-router-dom, material-ui, gh-pages and firebase. With google authentication, routing and deployment capabilities built in.
The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
Code samples for my book "Neural Networks and Deep Learning"
List of papers studying machine learning through the lens of category theory
A collection of research papers for AI-based protein design
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
A curated list of online chemical engineering education resources
Improve your coding skills mentored by a professional developer and solve real technical assignment from real companies!
Package for efficiently and reproducibly creating data visualizations for nanoparticle diffusion data