Commits

History for

Commits on Aug 15, 2023

Ready for 2.7.11a
alexdobin
committed
d57f92d

Commits on Aug 8, 2023

Preparing 2.7.11a
alexdobin
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826820c
Merged STARdiploid branch.
alexdobin
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40a8d6e

Commits on Jul 24, 2023

Issue #1909: Fixed a bug causing wrong sequence length in the UB SAM tag for --soloType CB_UMI_Complex.
alexdobin
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148129c

Commits on Jul 19, 2023

2.7.10b_alpha_2023-07-19. Finalized --soloCBtype String option for arbitrary cell barcode strings without passlist.
alexdobin
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fdf7a25

Commits on Jul 6, 2023

Added STARsolo BAM tag sF, which outputs the feature type and number of genes for each read.
alexdobin
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f31abdf

Commits on Jun 20, 2023

2.7.10b_alpha_23-06-20: Fixed a GstrandBit issue for the on-the-fly insertion of extra genomic sequences.
alexdobin
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0299f2b

Commits on Jun 9, 2023

Updated CHANGES.
alexdobin
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9beb898

Commits on Mar 24, 2023

Fixed issues with 2-pass and WASP for diploid genome mapping.
alexdobin
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f7b9edd

Commits on Mar 1, 2023

2.7.10b_alpha_230301: Issue #1763: Fixed a bug causing segnmentation fault in rare cases for 2-pass mapping.
alexdobin
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45fe3dd

Commits on Jan 11, 2023

2.7.10b_alpha_220111: Issue #1733: Fixed the issue with counting of intronicAS reads in STARsolo CellReads.stats output with --soloFeatures GeneFull_Ex50pAS option.
alexdobin
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f4fa8e8

Commits on Nov 1, 2022

2.7.10b
alexdobin
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9ec8b7e

Commits on Oct 20, 2022

Rearranged collapseUMIall().
alexdobin
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6f2442d

Commits on Oct 19, 2022

Reduced RAM usage for large STARsolo runs.
alexdobin
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e7e8833

Commits on Aug 31, 2022

Issue #719: implemented auto re-allocation of the SJ output buffer.
alexdobin
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4ef655b

Commits on Aug 25, 2022

Issue #1612: fixed the problem with Solo.out/SJ/raw/features.tsv sym-link.
alexdobin
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85f957f

Commits on Jun 1, 2022

Bug-fix alpha: 2.7.10a_alpha_220601 : Issue #1543: Fixed a segfault occurring for STARsolo multimappers and large number of reads per cell.
alexdobin
committed
c2f3c65

Commits on May 17, 2022

Issue #1558: Fixed a bug with output of GX/GN BAM tags without CB/UB. Bug-fix alpha patch: 2.7.10a_alpha_220517
alexdobin
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071e989

Commits on May 6, 2022

Bug-fix alpha: 2.7.10a_alpha_220506
alexdobin
committed
070b52e

Commits on Apr 13, 2022

Fixed a bug with --soloMultiMappers for small number of cells cases. Issue #1513: If --soloMultiMappers options are not requested, output 'NoMulti' in the 'Reads Mapped to Gene: Unique+Multiple Gen…
alexdobin
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03a5b8f

Commits on Mar 17, 2022

Fixed a problem with CellReads.stats output for no-passlist runs.
alexdobin
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f4d5de8

Commits on Feb 7, 2022

2.7.10a_alpha_220207
alexdobin
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ecec9ee
Issue #1469: fixed seg-fault introduced in 2.7.10a; release: 2.7.10a_alpha_220207.
alexdobin
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c3b8fa1

Commits on Jan 14, 2022

Ready for 2.7.10a
alexdobin
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51b64d4

Commits on Jan 12, 2022

dev_ExonOverIntron_ReadStats_2021-01-12
alexdobin
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1623bbf
Finalized CellReads statistics output.
alexdobin
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393d5ec

Commits on Oct 26, 2021

Changed --soloType CB_samTagOut behavior: if barcode cennot be matched to the passlist, CB:Z:- will be recorded (previously CB tag was absent for such reads).
alexdobin
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bdc0e32

Commits on Oct 20, 2021

Fixed a problem which results in a slightly different output for Solo SmartSeq after readAnnot.annotFeatures implementation.
alexdobin
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3e05311

Commits on Oct 1, 2021

Allow to define --clip5pAdapterSeq with --clipAdapterType CellRanger4 option. Fixed a problem with sym-linking of SJ.out.tab.
alexdobin
committed
7c13452

Commits on Sep 30, 2021

Issues #535, #1350: fixed a long-standing problem that resulted in a seg-fault whem mapping to the rabbit genome. Issue #1223: fixed the N_unmapped value reported in ReadsPerGene.out.tab. The singl…
alexdobin
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12beb0c

Commits on Sep 24, 2021

Issue #1316: fixed the seg-fault which occurred if --soloType CB_samTagOut and --soloCBwhitelist None are used together.
alexdobin
committed
e49af00

Commits on Sep 22, 2021

Commits on Sep 15, 2021