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nn-entropy Public
Estimate the configurational entropy of a molecular system, with a Rust library, CLI, and Python bindings.
Rust UpdatedSep 29, 2026 -
gisttools Public
Forked from liedllab/gisttoolsPost-processing of data generated by the GIST (Grid Inhomogeneous Solvation Theory) action in cpptraj
Jupyter Notebook GNU General Public License v3.0 UpdatedSep 1, 2026 -
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anki Public
Forked from ankitects/ankiAnki is a smart spaced repetition flashcard program
Rust Other UpdatedJul 5, 2026 -
alchemrs Public
Fast and thorough alchemical free energy analysis toolkit. Parse MD outputs, preprocess time series (equilibration, decorrelation), and run TI, NES, BAR, MBAR, UWHAM, and FEP estimators plus overla…
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python-ascii-plotter Public
An ascii function plotter for python. Written for Python 2 by Imri Goldberg and ported to Python 3 by myself.
Python UpdatedMar 28, 2026 -
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are-we-learning-yet-kiddo Public
Forked from anowell/are-we-learning-yetHow ready is Rust for Machine Learning?
Rust Creative Commons Attribution 4.0 International UpdatedDec 10, 2025 -
alchemlyb_doc_correction Public
Forked from alchemistry/alchemlybthe simple alchemistry library
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 4, 2025 -
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scientific-computing-in-rust-monthly-november Public
Forked from rust-scicomp/scientific-computing-in-rust-monthlyPython MIT License UpdatedOct 30, 2025 -
MDANCE-quieter Public
Forked from mqcomplab/MDANCEMDANCE is a flexible n-ary clustering package for all applications.
Python MIT License UpdatedMay 6, 2025 -
gist-tutorial-1 Public archive
Forked from liedllab/gist-tutorialGIST tutorial aimed at the Living Journal of Computational Molecular Science
TeX UpdatedJul 23, 2024 -
Nutter_et_al_2023 Public
Python scripts used in the analysis of data for "Choroid plexus mis-splicing and altered cerebrospinal fluid composition in myotonic dystrophy type 1"
Python UpdatedApr 22, 2024 -
bioinformatics_utilities Public
A collection of bioinformatics utilities I wrote in undergrad for studying changes associated with alternative splicing events in RNA-seq data.
Python UpdatedApr 14, 2021
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