Stars
Google-scholar alert helper by Gemini
Code and documentation for the curation of cellxgene datasets
Comprehensive analysis of single cell RNAseq and spatial transcriptomics in human acute and chronic wounds
NSZ - Homebrew compatible NSP/XCI compressor/decompressor
Spatially constrained color profiling for visualizing single-cell resolution spatial data
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Contrastive neighbor embeddings
A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.
Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
An open-source remote desktop application designed for self-hosting, as an alternative to TeamViewer.
Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Mod repo for Tears of The Kingdom (TOTK) for Switch and Switch Emulation
One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
dpeerlab / PhenoGraph
Forked from jacoblevine/PhenoGraphSubpopulation detection in high-dimensional single-cell data
An interactive explorer for single-cell transcriptomics data
R package for integrating and analyzing multiple single-cell datasets
Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised lear…
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
Microsoft PowerToys is a collection of utilities that supercharge productivity and customization on Windows
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