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  • Friedrich Miescher Institute for Biomedical Research (FMI)
  • Basel, Switzerland
  • Bluesky @imagejan.bsky.social

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Custom Prefect Result (CPR) enables task-run result caching in Prefect, while keeping the result data in any file-format e.g. tiff-file for image data or csv-file for tabular data.

Python 8 3 Updated Nov 13, 2023

Visualizer for neural network, deep learning and machine learning models

JavaScript 33,087 3,132 Updated Jun 14, 2026

πŸ’¬ Machine Learning Course with Python:

Python 7,040 1,236 Updated Nov 27, 2024

🧠 Laws, Theories, Principles and Patterns for developers and technologists.

HTML 27,173 1,561 Updated May 19, 2026

Terminal session recorder, streamer and player πŸ“Ή

Rust 17,424 1,027 Updated May 12, 2026

Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

Java 41 9 Updated Mar 26, 2026

Lecture notes and Exercises for lecture 1

Jupyter Notebook 3 1 Updated Dec 17, 2018

Increase the number of people publishing educational, journalistic, and scientific materials that enable readers to read, edit, re-run and re-use that content. Using mybinder.org

HTML 43 20 Updated Aug 27, 2018

Use ImageJ from Python

Python 532 94 Updated Mar 16, 2026

Jupyter notebook extension for proxing a VNC session

Python 28 17 Updated Dec 12, 2019

A quick intro to Dash made for the PyData event in Zurich

Jupyter Notebook 60 14 Updated Feb 25, 2018

Comprehensive list of color palettes available in R β€οΈπŸ§‘πŸ’›πŸ’šπŸ’™πŸ’œ

R 1,700 145 Updated Jun 1, 2026

This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course

Jupyter Notebook 18 3 Updated Oct 30, 2017

Turn static HTML pages into live documents with Jupyter kernels.

Jupyter Notebook 438 65 Updated May 14, 2025

Tool for visualizing GitHub profiles

Vue 19,945 513 Updated Feb 22, 2026

Automatically inlines SVG file in Reveal.js presentations. Allows the application of fragments, animations etc.to SVG DOM elements.

HTML 7 1 Updated Jan 12, 2020

A Maven plugin that generates dependency graphs in various formats (DOT, GML, PlantUML, JSON and Text)

Java 604 85 Updated Apr 24, 2024
Python 19 6 Updated Feb 27, 2020

BfR KNIME extensions (FoodChain-Lab, KNIME Nodes for GIS and Graph Visualization, KNIME Nodes for Nonlinear Regression, BfR Network Mining Extensions, PMM-Lab Lite)

Java 9 6 Updated Feb 9, 2026

πŸ’Œ An extensible desktop mail app built on the modern web. Forks welcome!

JavaScript 24,745 1,347 Updated Nov 24, 2022

The slides and exercises for the spring semester course at ETH Zurich

HTML 12 4 Updated Jun 9, 2017

Open scientific N-dimensional image processing πŸ”¬ πŸŽ‡

Java 1,380 345 Updated Aug 12, 2025

A "batteries-included" distribution of ImageJ πŸ”‹

Shell 983 256 Updated Jun 15, 2026