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studying cancer genomics
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studying cancer genomics

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A CLI interface for Marp and Marpit based converters

TypeScript 3,079 164 Updated Nov 3, 2025

Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy

Lua 564 139 Updated Dec 10, 2025

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Python 179 31 Updated Dec 15, 2025

aider is AI pair programming in your terminal

Python 39,031 3,740 Updated Dec 11, 2025

This VSCode extension allows users to quickly toggle the sort order of files in the Explorer panel between 'modified' and 'default'.

TypeScript 3 Updated Mar 15, 2025

Application Configuration files (xmonad, bash, etc)

Lua 3 Updated Dec 8, 2025

A MCP (Model Context Protocol) server for PowerPoint manipulation using python-pptx. This server provides tools for creating, editing, and manipulating PowerPoint presentations through the MCP prot…

Python 1,335 182 Updated Oct 17, 2025

The open source coding agent.

TypeScript 39,956 3,384 Updated Dec 18, 2025

An extremely fast Python type checker and language server, written in Rust.

Python 14,524 148 Updated Dec 18, 2025
Perl 186 56 Updated Jun 20, 2023

Plugins for the Ensembl Variant Effect Predictor (VEP)

Perl 162 124 Updated Dec 12, 2025

A curated list of essential tutorials, resources, and learning materials for Cursor Editor - the AI-first code editor for the AI-first world.

7 Updated Jan 21, 2025

👨‍💻 Python cleanup script for macOS

Python 2,286 92 Updated Oct 4, 2025

PhylogicNDT dockcer for clonal evolution analysis

Shell 1 Updated Oct 27, 2022

Lightweight coding agent that runs in your terminal

Rust 54,224 6,859 Updated Dec 18, 2025

An AI companion for reading papers.

JavaScript 1,568 206 Updated Apr 18, 2025

Investigate copy number alterations co-occurred in bi-allelic BRCA1/2 tumors, and identify genes enhancing proliferation in BRCA1-null and BRCA2-null cells

R 1 Updated Oct 9, 2023

LLM inference in C/C++

C++ 91,494 14,139 Updated Dec 18, 2025

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

Shell 46,417 3,253 Updated Dec 17, 2025

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 2,250 366 Updated Nov 23, 2025

LLM plugin to access Google's Gemini family of models

Python 410 46 Updated Dec 17, 2025

Uses LLM to perform optical character recognition (OCR)

Python 1 Updated Feb 7, 2025

Small Dataset Benchmarks on the Dataset of Datasets UCI++

Jupyter Notebook 93 17 Updated Jul 29, 2022

Read-only mirror of https://git.sr.ht/~rjarry/aerc. This repository does not accept pull requests. Please send contributions to https://lists.sr.ht/~rjarry/aerc-devel.

Go 207 9 Updated Dec 11, 2025
Python 40 23 Updated Jul 18, 2025

jimmy's dot files

Emacs Lisp 390 32 Updated Jul 7, 2025

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Python 21,119 2,036 Updated Dec 18, 2025

A conda-forge distribution.

Shell 9,013 459 Updated Dec 6, 2025

Speech Note Linux app. Note taking, reading and translating with offline Speech to Text, Text to Speech and Machine translation.

C++ 1,252 49 Updated Nov 23, 2025
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