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fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data
Community-contributed instructions, prompts, and configurations to help you make the most of GitHub Copilot.
Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalscope is able to detect subclones, label malignant cells, and …
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
A CLI interface for Marp and Marpit based converters
Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
aider is AI pair programming in your terminal
This VSCode extension allows users to quickly toggle the sort order of files in the Explorer panel between 'modified' and 'default'.
Application Configuration files (xmonad, bash, etc)
A MCP (Model Context Protocol) server for PowerPoint manipulation using python-pptx. This server provides tools for creating, editing, and manipulating PowerPoint presentations through the MCP prot…
An extremely fast Python type checker and language server, written in Rust.
Plugins for the Ensembl Variant Effect Predictor (VEP)
A curated list of essential tutorials, resources, and learning materials for Cursor Editor - the AI-first code editor for the AI-first world.
👨💻 Python cleanup script for macOS
PhylogicNDT dockcer for clonal evolution analysis
Lightweight coding agent that runs in your terminal
An AI companion for reading papers.
Investigate copy number alterations co-occurred in bi-allelic BRCA1/2 tumors, and identify genes enhancing proliferation in BRCA1-null and BRCA2-null cells
Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
LLM plugin to access Google's Gemini family of models
Uses LLM to perform optical character recognition (OCR)
Read-only mirror of https://git.sr.ht/~rjarry/aerc. This repository does not accept pull requests. Please send contributions to https://lists.sr.ht/~rjarry/aerc-devel.